imputation

A Python toolkit/library for reality-centric machine/deep learning & data mining on partially-observed time series, with 50+ SOTA neural network models for scientific analysis tasks (imputation, classification, clustering, forecasting, anomaly detection, cleaning) on incomplete industrial irregularly-sampled multivariate TS with NaN missing values

A unified multi-task time series model.

The official PyTorch implementation of the paper "SAITS: Self-Attention-based Imputation for Time Series". A fast and state-of-the-art (SOTA) deep-learning neural network model for efficient time-series imputation (impute multivariate incomplete time series containing NaN missing data/values with machine learning). https://arxiv.org/abs/2202.08516

Awesome Deep Learning for Time-Series Imputation, including an unmissable paper and tool list about applying neural networks to impute incomplete time series containing NaN missing values/data

Data imputations library to preprocess datasets with missing data

a Python toolbox loads 173 public time series datasets for machine/deep learning with a single line of code. Datasets from multiple domains including healthcare, financial, power, traffic, weather, and etc.

A framework for prototyping and benchmarking imputation methods

Official repository for the paper "Filling the G_ap_s: Multivariate Time Series Imputation by Graph Neural Networks" (ICLR 2022)

Race and ethnicity Imputation from Disease history with Deep LEarning

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

Official repository for the paper "Learning to Reconstruct Missing Data from Spatiotemporal Graphs with Sparse Observations" (NeurIPS 2022)

SSIM - A Deep Learning Approach for Recovering Missing Time Series Sensor Data

Missing data diagnosis, visualisation, and imputation for pandas — fluent df.miss accessor, sklearn Pipeline support, MICE, and time-series gap analysis

Python implementations of kNN imputation

PyTorch implementation of the NCDSSM models presented in the ICML '23 paper "Neural Continuous-Discrete State Space Models for Irregularly-Sampled Time Series".

Codes for: "Multivariate Time Series Imputation with Transformers"

[AAAI'25] The implementation of paper "Federated Foundation Models on Heterogeneous Time Series" | The first work to explore time series foundation models on federated setting.

Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy metrics like: IQS(Imputation Quality score), r2 (Pearson correlation), Concordance.

KDD2020 paper; Identifying Sepsis Subphenotypes via Time-Aware Multi-Modal Auto-Encoder

GWAS QC, PCA, haplotype phasing, genotype imputation