An AFM image analysis program to batch process data and obtain statistics from images
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Sep 24, 2026 - Python
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atomic-force-microscopy
Here are 21 public repositories matching this topic...
A library for loading various atomic force microscopy file formats.
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Sep 24, 2026 - Python
GUI for AFM data analysis with an emphasis on biological specimens
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Jul 8, 2026 - Python
Comparative Study of Deep Learning Algorithms for Atomic Force Microscope Image Denoising
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Jun 21, 2022 - Python
Stm cluster heights resizer (stm-cluster-heightzer) is a class that finds peaks of clusters (high bumps) in a scanning tunneling microscope (STM) image(data) and if necessary corrects the heights of the individual clusters to the surrounding surface.
python cluster image-processing stm atomic-force-microscopy scanning-tunnelling-microscopy scanning-tunelling-microscope heights-correction metal-clusters
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Apr 16, 2024 - Python
Object-oriented Scanning Probe Microscopy files
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Dec 9, 2023 - Python
Automated AFM morphology analysis with CNN classification, U-Net segmentation, Voronoi and ColorWheel pipelines, mask editing, batch processing, and reproducible validation.
flask deep-learning afm reproducible-research nextjs cnn pytorch voronoi image-segmentation image-analysis unet scientific-software atomic-force-microscopy polymer-science onii-chan
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Aug 19, 2026 - Python
Toolset to load and manipulate SNOM/AFM data
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Feb 18, 2026 - Python
Plugins to import AFM data in Blender
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Jan 13, 2025 - Python
Differentiable High-Speed AFM (HS-AFM) simulation for protein structures. JAX-powered toolkit for generating synthetic movies with realistic tip-dilation and scanning lag.
simulation structural-biology computational-biology biophysics protein-dynamics jax atomic-force-microscopy computational-biophysics hs-afm computational-structural-biology differentiable-physics high-speed-afm afm-analysis
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Jul 2, 2026 - Python
🔬 💻 A GUI Tool For Converting Thorlabs Educational Atomic Force Microsocope Scans to 3D Printable Mesh
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Aug 26, 2026 - Python
This is the GitHub repository for AFMDAQ Visualizer, a project with the objective of acquiring and processing raw AFM data to plot variables of interest related to the type of microscopy.
afm plotting freeware atomic-force-microscopy piezoresponse-force-microscopy force-volume-afm-mode afm-topography
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Apr 30, 2024 - Python
FunFit software for preprocessing and fitting topography data to analytical functions.
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Jun 30, 2025 - Python
Digital Analytical Twin Markup Language: an open specimen-centred spatial context format for multimodal analytical science.
xml interoperability electron-microscopy surface-analysis atomic-force-microscopy digital-twins analytical-data optical-microscopy datml correlative-microscopy self-driving-laboratory
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Jul 17, 2026 - Python
Closed loop workflow for generation of streamfiles for FIB etching
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Jun 7, 2026 - Python
Analysis plugins for pyNuD: particle tracking, kymographs, L-AFM, filament analysis, dwell times, AFM simulation and more.
single-molecule afm image-analysis microscopy biophysics atomic-force-microscopy scanning-probe-microscopy high-speed-afm
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Sep 17, 2026 - Python
Image reconstruction for AFM scans based on a pytorch implementation of Noise2Noise
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Jun 24, 2025 - Python
Simulation of Dynamics of Micro-Cantilevers
partial-differential-equations numerical-methods finite-difference-method atomic-force-microscopy euler-beam
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Aug 18, 2024 - Python
SOftware for Force Analysis - A graphical user interface to analyze Atomic Force Microscopy Force Spectroscopy data
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Nov 21, 2024 - Python
GUI and CLI toolkit for analyzing nanofiber morphology from AFM height images
python afm image-processing image-analysis materials-science background-subtraction skeletonization atomic-force-microscopy tikinter nanofibers nanocellulose
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Sep 17, 2026 - Python
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