Open source guides/codes for mastering deep learning to deploying deep learning in production in PyTorch, Python, Apptainer, and more.
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Sep 4, 2025 - Python
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apptainer
Here are 27 public repositories matching this topic...
Generate custom Docker and Singularity images, and minimize existing containers
linux docker science dockerfile reproducible-research containers neuroscience singularity-container nipype apptainer
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Jan 19, 2026 - Python
🦠🧬🧑💻📇 Microbial genomes-to-report pipeline
bioinformatics snakemake hpc slurm conda metagenomics bioconda microbial-genomics bacteria clinical-research pbs prokaryotes archaea genomes-to-report apptainer
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Nov 11, 2025 - Python
Singularity recipe for AlphaFold
hpc containers slurm singularity high-performance-computing containerization protein-folding alphafold apptainer
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Nov 12, 2024 - Python
Container manager for E4S
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Jan 22, 2026 - Python
Automated builds of Apptainer containers of HPC packages; focusing on OpenFOAM and friends
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Nov 22, 2025 - Python
MolSSI Container Hub for Computational Molecular Science
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Sep 20, 2024 - Python
Pixi is cool, apptainer is cool, let's make them both work togerther !
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Jan 22, 2026 - Python
Repo2apptainer: Wrapper around repo2docker producing Jupyter enabled Apptainer/Singularity images.
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Jan 5, 2026 - Python
Lesson about containers for HPC with focus on Apptainer.
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Oct 11, 2024 - Python
Nextflow course for ALBA - 2024
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Feb 9, 2024 - Python
An Apptainer/Singularity container for using various GPU-based physics simulators (mujoco-mjx, genesis)
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Aug 14, 2025 - Python
A Snakemake workflow for the post-processing of microbial genome assemblies.
quality-control pipeline genomics conda bacteria genome-sequencing genome-assembly postprocessing snakemake-workflow microbes apptainer
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Dec 10, 2025 - Python
An introduction to apptainer
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May 28, 2024 - Python
A multi-OS, multi-architecture, restorable, portable, and shareable AI-ready environment for Python or R
python linux docker data-science development ai conda collaboration virtualenv pip scientific-computing virtual venv portability science-research podman os-independent architecture-agnostic apptainer
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Jan 4, 2026 - Python
Hoffman2 Workshop on Containers
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Jan 29, 2025 - Python
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