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1. Commits on Sep 30, 2026

   • introduce --threads to sort command

     

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2. Commits on Sep 10, 2026

   • mpileup: add --progress[=INT] to periodically print the current position

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   • norm: add --progress[=INT] to periodically print the current position

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   • view: add --progress[=INT] to periodically print the current position

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3. Commits on Aug 30, 2026

   • New option `-F, --format` to extend the consequence annotation.

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4. Commits on Aug 21, 2026

   • Fix man page typo, correct is --trim-unseen-allele, not --trim-unseen-alleles (resolves #2586)

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   • New option `--allow` to selectively relax validation checks

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5. Commits on Jul 9, 2026

   • Release 1.24

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6. Commits on Jun 16, 2026

   • Update man page

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7. Commits on Apr 7, 2026

   • Fix erroneous INFO/END recalculation; New --no-realign option

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8. Commits on Mar 30, 2026

   • Add new `-m exact` merging mode. Resolves #2498

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9. Commits on Mar 18, 2026

   • Merge version number bump and NEWS file from master

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   • Release 1.23.1

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10. Commits on Mar 4, 2026

    • minor: Update man page

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11. Commits on Dec 16, 2025

    • Release 1.23

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12. Commits on Oct 9, 2025

    • Emphasize there is a difference when annotating from VCF/BCF vs tab-delimited annotation file (#2454)

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13. Commits on Jul 21, 2025

    • Make `-d, --max-depth 0` set the depth to unlimited

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14. Commits on Jun 22, 2025

    • Add smpl_count/scount functions, similar to other per-sample functions

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15. Commits on Jun 20, 2025

    • Allow non-existent chromosomes in fasta file when --force is used (such as chrMT). Update documentation

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16. Commits on Jun 15, 2025

    • Make gtcheck understand gVCF blocks

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17. Commits on May 30, 2025

    • Add options `--samples-list` and `--samples-file`

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    • Release 1.22

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18. Commits on May 20, 2025

    • Add the option `-v, --verbosity INT` to all bcftools commands and plugins

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19. Commits on Apr 30, 2025

    • New option to remove or annotate clusters of sites within a window

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20. Commits on Mar 20, 2025

    • Merge branch 'develop' of github.com:samtools/bcftools into develop

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    • Rename AFS to VRFS, variant read frequency score

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21. Commits on Mar 19, 2025

    • Change in the `--unify-chr-names` option

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22. Commits on Mar 18, 2025

    • Add experimental support for alternative genetic code tables

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23. Commits on Mar 5, 2025

    • updatedoc

      

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24. Commits on Feb 27, 2025

    • Add filtering/annotation support for Fishers exact test

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25. Commits on Jan 29, 2025

    • Make the regex negation work correctly with missing values

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    • Escape (C), it was not meant to be a copyright character!

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26. Commits on Jan 2, 2025

    • Make it possible to refer to the ID column from the FORMAT expression

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27. Commits on Dec 28, 2024

    • Update bcftools/roh and roh-viz documentation

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28. Commits on Dec 16, 2024

    • Update documentation,

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