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Toil and toil-vg both want the <code>--config</code> option

Status: Open.

#5419 In DataBiosphere/toil;

· adamnovak opened on Dec 11, 2025

Can't install <code>toil[cwl]==9.1.2</code> because of <code>psutil</code> dep

Status: Open.

#5418 In DataBiosphere/toil;

· lnicola opened on Dec 10, 2025

Fix conformance badge

cwl

Status: Open.

#5417 In DataBiosphere/toil;

· unito-bot opened on Dec 10, 2025

Support WDL 1.2's extended File/Directory syntax

wdl

Status: Open.

#5409 In DataBiosphere/toil;

· unito-bot opened on Nov 12, 2025

Make file store layout pretty using hints

cwl

wdl

Status: Open.

#5401 In DataBiosphere/toil;

· unito-bot opened on Oct 13, 2025

Temporary blacklist of cluster nodes after repeated job failures?

Status: Open.

#5400 In DataBiosphere/toil;

· tikk3r opened on Oct 13, 2025

Toil Kubernetes needs a hook for running <code>singularity registry login</code> commands for feature parity with <code>TOIL_CUSTOM_DOCKER_INIT_COMMAND</code> on Mesos

Status: Open.

#5396 In DataBiosphere/toil;

· adamnovak opened on Sep 26, 2025

The concept of <code>exactPython</code> as a constant in <code>version.py</code> is fataly flawed for release packages

bug

build

Status: Open.

#5389 In DataBiosphere/toil;

· adamnovak opened on Sep 16, 2025

No outputs in s3 bucket after toil-cwl-runner k8s run, with error non-scalable batch system

Status: Open.

#5380 In DataBiosphere/toil;

· boyangzhao opened on Aug 23, 2025

Support WDL 1.2 hints

wdl

Status: Open.

#5378 In DataBiosphere/toil;

· unito-bot opened on Aug 22, 2025

Support WDL 1.2 <code>allow_nested_inputs</code> hint

wdl

Status: Open.

#5377 In DataBiosphere/toil;

· unito-bot opened on Aug 22, 2025

Expose <code>task</code> object to WDL tasks

wdl

Status: Open.

#5376 In DataBiosphere/toil;

· unito-bot opened on Aug 22, 2025