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Commits on Jan 21, 2026

• Merge pull request #297 from asherpasha/dev

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• Updated requirements.txt

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Commits on Dec 9, 2025

• Merge pull request #291 from asherpasha/dev

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• Minor changes.

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• Publication figures tested!

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• GAIA publications collection initial commit.

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Commits on Nov 3, 2025

• Merge pull request #286 from asherpasha/dev

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• More fixes.

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Commits on Oct 31, 2025

• Merge pull request #285 from asherpasha/dev

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• Worked on the new gaia databases

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Commits on Oct 29, 2025

• Merge pull request #284 from asherpasha/dev

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• GAIA: initial commit

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• Merge pull request #282 from asherpasha/dev

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• Updated dependancies

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Commits on Sep 29, 2025

• Merge pull request #280 from asherpasha/dev

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• Some changes.

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Commits on Sep 25, 2025

• Merge pull request #278 from asherpasha/dev

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• Updates.

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Commits on Aug 7, 2025

• Merge pull request #276 from asherpasha/dev

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• Merge branch 'BioAnalyticResource:dev' into dev

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• Fixed a bug and updated tests.

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• Merge pull request #275 from asherpasha/dev

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• Enabled eFP Grape

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Commits on Jul 25, 2025

• Merge pull request #273 from asherpasha/dev

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• Documentation dependancies upgraded.

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• Dependencies upgrade.

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• Merge pull request #272 from VinLau/dev

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Commits on Jul 24, 2025

• deleted Xiao Feng's SNP additions to RNA-seq data NOT because of code quality but because provided SNP data was inaccurate and could not reach author's to get resolution (BnIR; Yang et al., 2023), …

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Commits on May 15, 2025

• Merge pull request #267 from TeresasaZ/dev

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Commits on May 12, 2025

• test node endpoints, including tags, grns, papers, by agi and by ref. Committing files include interactions database, interactions, model, output json files, cfg, init.sh and test file

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• changed get paper by agi pair json output file

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Commits on May 2, 2025

• Merge pull request #266 from TeresasaZ/dev

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Commits on Apr 23, 2025

• modified mfinder, added github environment skip pytest

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Commits on Apr 22, 2025

• all agent changes, including model, database, cfg, interactions, test code, and testing json files.

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Commits on Apr 19, 2025

• Merge pull request #265 from asherpasha/dev

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