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AlsammanAlsamman/README.md
Alsamman

Bioinformatics is my work, my interest, and my passion

Bioinformatician at the Oklahoma Medical Research Foundation β€” statistical genetics, GWAS and fine-mapping, reproducible HPC pipelines, and tools that make analysis easier to trust.

I love connecting with different people! Feel free to reach out and say hi!

waving

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What I work on

  • Statistical genetics β€” GWAS, fine-mapping (SuSiE, FINEMAP, COJO), LD, imputation, local ancestry
  • Pipelines on HPC β€” Snakemake + SLURM workflows that scale from one locus to the whole genome
  • Sequence analysis β€” alignment statistics, Sanger QC, VCF harmonization
  • Research tooling with AI β€” provenance tracking and remembering what worked, so analyses can be reproduced and reused

πŸš€ Featured projects

πŸ”­ LYNXgwas

GWAS Β· Fine-mapping Β· Visualization

Local GWAS visualization and fine-mapping platform: loci, rsIDs, LD, a full fine-mapping suite and an interactive Manhattan / LD / gene-track viewer β€” all in your browser.

stars Web App GWAS

πŸ•ΈοΈ SciWeave

Provenance Β· Reproducibility

Everything your analysis produces, woven into one provenance network with the data, pipelines, parameters and scripts behind it.

stars Provenance AI tooling

🧠 brainny

AI memory Β· Knowledge capture

Remembers how you work with AI β€” captures the techniques, precautions and solutions you invent in passing so you can reuse them.

stars Python AI tooling

πŸ’ž myGeeKy

Research networking Β· GitHub

Find GitHub people who share your research β€” and will actually follow you back. Your CV, repos, ORCID & Google Scholar papers β†’ people and projects worth your time.

stars Python PyPI

πŸŒ€ crazyAI

AI research Β· Impossible ideas

The impossible, disguised as possible and true β€” an AI builds on one deliberately mutated rule with full mathematical rigour, a fresh session checks it, and a judge measures the result.

stars Python C%2B%2B kernels

πŸ“š SciLibra

Literature Β· Mobile app

Manage and organize your scientific PDF articles on mobile and desktop β€” a pocket library for researchers, students and academics.

stars Python Kivy

πŸ“Š alignstatplot

Sequence analysis Β· R package

R package for sequence alignment, descriptive analysis and visualization of the results.

stars R R package

πŸ”¬ SangerScope

Sanger QC Β· Identification

Sanger chromatogram QC, forward/reverse consensus assembly and NCBI identification.

stars Python NCBI BLAST

🌾 HaploTraitR

Haplotypes Β· Trait association

Haplotype analysis linking LD-based SNP haplotypes to variation in traits.

stars R LD haplotypes

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